Plasticity is something that also mystifies neuroscience. The world "mystify" usually ties atheist's panties into knots because of their insecurities, but it truly is a fitting word.In our view, this ‘gene-centric’ focus fails to capture the full gamut of processes that direct evolution. Missing pieces include how physical development influences the generation of variation (developmental bias); how the environment directly shapes organisms’ traits (plasticity); how organisms modify environments (niche construction); and how organisms transmit more than genes across generations (extra-genetic inheritance). For SET, these phenomena are just outcomes of evolution. For the EES, they are also causes.
How the environment influences plasticity and what the mechanism is that controls it is exemplified I think by the appearance, disappearance and reappearance of a trait.
I think Darwinian evolution fails to address this, but attempts to with ad hoc explanations. I'm not familiar with what some might be.
I guess the explanation for fetal development is simply "It's an algorithm" or "it's silly to question it - it just does"